componentsplot {activityGCMM} | R Documentation |
Plot of activity curves for the separate components in the circular mixture model
componentsplot( model, rug = FALSE, ruglwd = 2, lwd = 3, col = c("black", "grey40", "grey60", "grey80"), scale = "NULL", ymax = "NULL", lty = 1, axisunits = c("radians", "sun", "solar", "time", "none"), xlines = TRUE )
model |
Model output from |
rug |
Logical argument for whether to plot a rug of the raw values. Plotting the rug for the separate components requires that saveclustIDs=TRUE when running GCMM. default=FALSE |
ruglwd |
Line width for rug plot |
lwd |
Line width for activity curve lines |
col |
Character vector for colours for the activity curve lines and rug plot; must be of equal length to the number of components |
scale |
Scale for the plot, either "pi" (-pi, pi) or "2pi" (0, 2pi); default is that recommended by the GCMM function |
ymax |
Value for upper limit of y-axis |
lty |
Line type for activity curve |
axisunits |
Scale to use for the xaxis, either "radians", "time", "solar", "sun", or "none"; default="radians" |
xlines |
Whether to include lines on the graph for the x axis labels; default=TRUE |
Plot of the separate components of the circular mixture model
FoxActivityGCMM<-GCMM(data=redfoxsample$Radians, RE1=redfoxsample$SamplingPeriod, family="vonmises", autorun=FALSE, adapt=0, sample=300, burnin=300, thin=1,n.chains=2) componentsplot(FoxActivityGCMM)