activityHPD |
Activity highest posterior density interval estimates (activityHPD) |

activityHPDmean |
Activity highest posterior density interval from mean activity curve |

APDatPeak |
Activity Probability Density at Peak Time of Another |

APDpointplot |
Activity Probability Density Point Plot |

calcAPD |
Calculate activity probability density |

calcprop |
Calculate proportions of circular variable within an interval |

circaxis |
Axis labels for circular temporal data plots |

circplotHPD |
Circular plot of activity HPD intervals |

circplotmeans |
Circular plot of GCMM means |

circplotREs |
Random Effects Circular Plot |

combineMCMC |
Combine MCMC chains for posterior simulations |

comboplot |
GCMM Combined Plot |

compareGCMM |
Compare GCMM parameters or estimates |

compareGCMMfit |
Compare fit of GCMM models based on circular residuals |

componentsplot |
GCMM Components Plot |

convertRad |
Convert Radians Scale |

exampleGCMM |
Executable example of GCMM function |

extractparam |
Extract parameters for posterior simulations |

GCMM |
Generalized circular mixed effect mixture (GCMM) model |

GCMMpdens |
Predict activity probability density at a time point |

GCMMpeaksplot |
Plot estimated time of activity peaks |

GCMMppc |
Posterior predictive check of GCMM model |

GCMMprob |
Probability of Activity during Time Period |

GCMMsims |
Create GCMM simulations |

GCMMsimsparams |
Extract GCMM parameters for running GCMM simulations |

HDI |
Calculate highest density interval |

HPDoverlap |
Activity HPD Overlap |

humanssample |
Sample data of camera trap observations of humans |

mixtureplot |
GCMM Mixture Plot |

mode |
Mode |

multiplot |
Plot multiple GCMM activity curves |

PDS |
Posterior distribution summaries and support |

peaksPDplot |
Plot estimated number of activity peaks |

plotactivityHPD |
Plot activity curve with activityHPDs |

plotGCMMsamples |
Plot GCMM Activity Curve Posterior Samples |

plotREs |
Plot GCMM activity curve with random intercepts |

posteriorhistplot |
Plot histogram of posterior distribution |

progress |
Report function progress |

redfoxsample |
Sample data of camera trap observations of red fox |

samplerows |
Sample rows of dataframe |

sumCircResids |
Calculate sum of absolute circular residuals |

updateGCMM |
Extend GCMM analysis |

xaxis |
Axis labels for temporal activity plots |

yMax |
Calculate y-axis limit for plotting multiple activity curves |