| diversity_measures {abdiv} | R Documentation |
Diversity measures implemented
Description
The diversity functions offered in abdiv are organized based on the
function signature.
Usage
alpha_diversities
beta_diversities
phylogenetic_alpha_diversities
phylogenetic_beta_diversities
Format
Four objects of class character.
Details
The following character vectors are provided:
alpha_diversities-
All non-phylogenetic alpha diversity measures. These functions take a single numeric vector as an argument.
beta_diversities-
All non-phylogenetic beta diversity measures. These functions take two numeric vectors as arguments.
phylogenetic_alpha_diversities-
There is only one phylogenetic alpha diversity measure implemented, but we use the plural to be consistent with the other vectors. This function takes a numeric vector, a phylogenetic tree object, and optionally a character vector of species labels.
phylogenetic_beta_diversities-
Phylogenetic measures of beta diversity. These functions take two numeric vectors, a phylogenetic tree object, and optionally a character vector of species labels.