LUDWIGMS {aLFQ}

Estimation of Absolute Protein Quantities of Unlabeled Samples by Selected Reaction Monitoring Mass Spectrometry..

Description

This dataset contains the Leptospira interrogans MS data from Ludwig C., et al. (2012).

Usage

data(LUDWIGMS)

Format

The data structure for LUDWIG_SRM represents a data.frame containing the following column header: "run_id" (freetext), "protein_id" (freetext), "peptide_id" (freetext), "transition_id" (freetext), "peptide_sequence" (unmodified, natural amino acid sequence in 1-letter nomenclature), "precursor_charge" (positive integer value), "transition_intensity" (positive non-logarithm floating value) and "concentration" (calibration: positive non-logarithm floating value, prediction: "?").

References

Ludwig, C., Claassen, M., Schmidt, A. & Aebersold, R. Estimation of Absolute Protein Quantities of Unlabeled Samples by Selected Reaction Monitoring Mass Spectrometry. Molecular & Cellular Proteomics 11, M111.013987-M111.013987 (2012).

See Also

import, ProteinInference, AbsoluteQuantification, ALF, APEX, apexFeatures, proteotypic

Examples

data(LUDWIGMS)