| Jahn_CellReports_2018 {WeightedTreemaps} | R Documentation |
Data from the publication of Jahn et al., CellReports, 2018
Description
The dataset contains protein abundances of the Synechocystis sp. PCC6803 proteome. Protein abundance was determined using shotgun mass spectrometry. The data set also contains pathway information according to the cyanobase hierarchical annotation:
Usage
data(Jahn_CellReports_2018)
Format
A data frame with 19790 rows and 12 variables
Details
protein - protein ID
condition - combination from light and CO2
light - light intensity in umol photons / m2 * s
co2_concentration - CO2 concentration in
mean_intensity - mean MS1 ion intensity
mean_mass_fraction_norm - normalized mean mass fraction of protein
sd_intensity - standard deviation from mean
Process - functional annotation 1st level
Pathway - functional annotation 2nd level
Protein - functional annotation 3rd level
Process.abbr - abbreviated Process
Pathway.abbr - abbreviated Pathway
Gene.names - trivial names of genes, if available
Source
https://pubmed.ncbi.nlm.nih.gov/30304686/