listReferenceSet {WebGestaltR}

List Reference Sets

Description

List available reference sets for the given organism on WebGestalt server.

Usage

listReferenceSet(
  organism = "hsapiens",
  hostName = "https://www.webgestalt.org/",
  cache = NULL
)

Arguments

organism

Currently, WebGestaltR supports 12 organisms. Users can use the function listOrganism to check available organisms. Users can also input others to perform the enrichment analysis for other organisms not supported by WebGestaltR. For other organisms, users need to provide the functional categories, interesting list and reference list (for ORA method). Because WebGestaltR does not perform the ID mapping for the other organisms, the above data should have the same ID type.

hostName

The server URL for accessing data. Mostly for development purposes.

cache

A directory to save data cache for reuse. Defaults to NULL and disabled.

Value

A list of reference sets.