Vicus-package {Vicus}

Exploiting Local Structures to Improve Network-Based Analysis of Biological Data

Description

Compared with the similar graph embedding method such as Laplacian Eigenmaps, 'Vicus' can exploit more local structures of graph data. For the details of the methods, see the reference section of 'GitHub' README.md <https://github.com/rikenbit/Vicus>.

Details

The DESCRIPTION file:

Package:	Vicus
Type:	Package
Title:	Exploiting Local Structures to Improve Network-Based Analysis of Biological Data
Version:	0.99.0
Authors@R:	c(person("Koki", "Tsuyuzaki", role = c("aut", "cre"), email = "[e-mail]"))
Depends:	R (>= 3.4.0)
Imports:	methods, utils, RANN, Matrix, RSpectra
Suggests:	scatterplot3d, knitr, rmarkdown, testthat
Description:	Compared with the similar graph embedding method such as Laplacian Eigenmaps, 'Vicus' can exploit more local structures of graph data. For the details of the methods, see the reference section of 'GitHub' README.md <https://github.com/rikenbit/Vicus>.
License:	MIT + file LICENSE
URL:	https://github.com/rikenbit/Vicus
VignetteBuilder:	knitr
Author:	Koki Tsuyuzaki [aut, cre]
Maintainer:	Koki Tsuyuzaki <[e-mail]>

Index of help topics:

Vicus-package           Exploiting Local Structures to Improve
                        Network-Based Analysis of Biological Data
embedding               Graph Embedding
graphMatrix             Graph Laplacian type matrix

Author(s)

NA

Maintainer: NA

References

Wang B, et al., (2017). Vicus: Exploiting local structures to improve network-based analysis of biological data. PLOS Computational Biology. 13(10), e1005621

See Also

graphMatrix,embedding

Examples

ls("package:Vicus")