aa.MODE {VLF} | R Documentation |
Amino Acid Modal Sequence
Description
Calculates the amino acid sequence that occurs most often in a matrix of amino acid sequences
Usage
aa.MODE(freq.matrix, seqlength)
Arguments
freq.matrix |
Freuqncy matrix for amino acids. |
seqlength |
Length of amino acid sequences. |
Details
The argument freq.matrix can be calculated using the function aa.frequency.matrix.function
Value
A vector containing the amino acid sequence that occurs most often.
Author(s)
Taryn B. T. Athey and Paul D. McNicholas
Examples
## Not run: data(birds_aminoAcids)
birds_aminoAcid_count <- aa.count.function(birds_aminoAcids, 216)
aminoAcid_frequency.Matrix <- aa.frequency.matrix.function(birds_aminoAcid_count, 216)
aminoAcid_Modal <- aa.MODE(aminoAcid_frequency.Matrix, 216)
## End(Not run)
[Package VLF version 1.1 Index]