R: Generalized Extreme Value Regression Family Function

gev {VGAM}

R Documentation

Generalized Extreme Value Regression Family Function

Description

Maximum likelihood estimation of the 3-parameter generalized extreme value (GEV) distribution.

Usage

gev(llocation = "identitylink", lscale = "loglink",
    lshape = logofflink(offset = 0.5), percentiles = c(95, 99),
    ilocation = NULL, iscale = NULL, ishape = NULL, imethod = 1,
    gprobs.y = (1:9)/10, gscale.mux = exp((-5:5)/6),
    gshape = (-5:5) / 11 + 0.01,
    iprobs.y = NULL, tolshape0 = 0.001,
    type.fitted = c("percentiles", "mean"),
    zero = c("scale", "shape"))
gevff(llocation = "identitylink", lscale = "loglink",
    lshape = logofflink(offset = 0.5), percentiles = c(95, 99),
    ilocation = NULL, iscale = NULL, ishape = NULL, imethod = 1,
    gprobs.y = (1:9)/10, gscale.mux = exp((-5:5)/6),
    gshape = (-5:5) / 11 + 0.01,
    iprobs.y = NULL, tolshape0 = 0.001,
    type.fitted = c("percentiles", "mean"), zero = c("scale", "shape"))

Arguments

`llocation`, `lscale`, `lshape`	Parameter link functions for `\mu`, `\sigma` and `\xi` respectively. See `Links` for more choices. For the shape parameter, the default `logofflink` link has an offset called `A` below; and then the linear/additive predictor is `\log(\xi+A)` which means that `\xi > -A`. For technical reasons (see Details) it is a good idea for `A = 0.5`.
`percentiles`	Numeric vector of percentiles used for the fitted values. Values should be between 0 and 100. This argument is ignored if `type.fitted = "mean"`.
`type.fitted`	See `CommonVGAMffArguments` for information. The default is to use the `percentiles` argument. If `"mean"` is chosen, then the mean `\mu + \sigma (\Gamma(1-\xi)-1) / \xi` is returned as the fitted values, and these are only defined for `\xi<1`.
`ilocation`, `iscale`, `ishape`	Numeric. Initial value for the location parameter, `\sigma` and `\xi`. A `NULL` means a value is computed internally. The argument `ishape` is more important than the other two. If a failure to converge occurs, or even to obtain initial values occurs, try assigning `ishape` some value (positive or negative; the sign can be very important). Also, in general, a larger value of `iscale` tends to be better than a smaller value.
`imethod`	Initialization method. Either the value 1 or 2. If both methods fail then try using `ishape`. See `CommonVGAMffArguments` for information.
`gshape`	Numeric vector. The values are used for a grid search for an initial value for `\xi`. See `CommonVGAMffArguments` for information.
`gprobs.y`, `gscale.mux`, `iprobs.y`	Numeric vectors, used for the initial values. See `CommonVGAMffArguments` for information.
`tolshape0`	Passed into `dgev` when computing the log-likelihood.
`zero`	A specifying which linear/additive predictors are modelled as intercepts only. The values can be from the set {1,2,3} corresponding respectively to `\mu`, `\sigma`, `\xi`. If `zero = NULL` then all linear/additive predictors are modelled as a linear combination of the explanatory variables. For many data sets having `zero = 3` is a good idea. See `CommonVGAMffArguments` for information.

Details

The GEV distribution function can be written

G(y) = \exp( -[ (y-\mu)/ \sigma ]_{+}^{- 1/ \xi})

where \sigma > 0, -\infty < \mu < \infty, and 1 + \xi(y-\mu)/\sigma > 0. Here, x_+ = \max(x,0). The \mu, \sigma, \xi are known as the location, scale and shape parameters respectively. The cases \xi>0, \xi<0, \xi = 0 correspond to the Frechet, reverse Weibull, and Gumbel types respectively. It can be noted that the Gumbel (or Type I) distribution accommodates many commonly-used distributions such as the normal, lognormal, logistic, gamma, exponential and Weibull.

For the GEV distribution, the kth moment about the mean exists if \xi < 1/k. Provided they exist, the mean and variance are given by \mu+\sigma\{ \Gamma(1-\xi)-1\}/ \xi and \sigma^2 \{ \Gamma(1-2\xi) - \Gamma^2(1-\xi) \} / \xi^2 respectively, where \Gamma is the gamma function.

Smith (1985) established that when \xi > -0.5, the maximum likelihood estimators are completely regular. To have some control over the estimated \xi try using lshape = logofflink(offset = 0.5), say, or lshape = extlogitlink(min = -0.5, max = 0.5), say.

Value

An object of class "vglmff" (see vglmff-class). The object is used by modelling functions such as vglm, and vgam.

Warning

Currently, if an estimate of \xi is too close to 0 then an error may occur for gev() with multivariate responses. In general, gevff() is more reliable than gev().

Fitting the GEV by maximum likelihood estimation can be numerically fraught. If 1 + \xi (y-\mu)/ \sigma \leq 0 then some crude evasive action is taken but the estimation process can still fail. This is particularly the case if vgam with s is used; then smoothing is best done with vglm with regression splines (bs or ns) because vglm implements half-stepsizing whereas vgam doesn't (half-stepsizing helps handle the problem of straying outside the parameter space.)

Note

The VGAM family function gev can handle a multivariate (matrix) response, cf. multiple responses. If so, each row of the matrix is sorted into descending order and NAs are put last. With a vector or one-column matrix response using gevff will give the same result but be faster and it handles the \xi = 0 case. The function gev implements Tawn (1988) while gevff implements Prescott and Walden (1980).

Function egev() has been replaced by the new family function gevff(). It now conforms to the usual VGAM philosophy of having M1 linear predictors per (independent) response. This is the usual way multiple responses are handled. Hence vglm(cbind(y1, y2)..., gevff, ...) will have 6 linear predictors and it is possible to constrain the linear predictors so that the answer is similar to gev(). Missing values in the response of gevff() will be deleted; this behaviour is the same as with almost every other VGAM family function.

The shape parameter \xi is difficult to estimate accurately unless there is a lot of data. Convergence is slow when \xi is near -0.5. Given many explanatory variables, it is often a good idea to make sure zero = 3. The range restrictions of the parameter \xi are not enforced; thus it is possible for a violation to occur.

Successful convergence often depends on having a reasonably good initial value for \xi. If failure occurs try various values for the argument ishape, and if there are covariates, having zero = 3 is advised.

Author(s)

T. W. Yee

References

Yee, T. W. and Stephenson, A. G. (2007). Vector generalized linear and additive extreme value models. Extremes, 10, 1–19.

Tawn, J. A. (1988). An extreme-value theory model for dependent observations. Journal of Hydrology, 101, 227–250.

Prescott, P. and Walden, A. T. (1980). Maximum likelihood estimation of the parameters of the generalized extreme-value distribution. Biometrika, 67, 723–724.

Smith, R. L. (1985). Maximum likelihood estimation in a class of nonregular cases. Biometrika, 72, 67–90.

Examples

## Not run: 
# Multivariate example
fit1 <- vgam(cbind(r1, r2) ~ s(year, df = 3), gev(zero = 2:3),
             data = venice, trace = TRUE)
coef(fit1, matrix = TRUE)
head(fitted(fit1))
par(mfrow = c(1, 2), las = 1)
plot(fit1, se = TRUE, lcol = "blue", scol = "forestgreen",
     main = "Fitted mu(year) function (centered)", cex.main = 0.8)
with(venice, matplot(year, depvar(fit1)[, 1:2], ylab = "Sea level (cm)",
     col = 1:2, main = "Highest 2 annual sea levels", cex.main = 0.8))
with(venice, lines(year, fitted(fit1)[,1], lty = "dashed", col = "blue"))
legend("topleft", lty = "dashed", col = "blue", "Fitted 95 percentile")

# Univariate example
(fit <- vglm(maxtemp ~ 1, gevff, data = oxtemp, trace = TRUE))
head(fitted(fit))
coef(fit, matrix = TRUE)
Coef(fit)
vcov(fit)
vcov(fit, untransform = TRUE)
sqrt(diag(vcov(fit)))  # Approximate standard errors
rlplot(fit)

## End(Not run)

[Package VGAM version 1.1-11 Index]