vis_pcawg_dist {UCSCXenaShiny} | R Documentation |
Visualize molecular profile in PCAWG
Description
Visualize molecular profile in PCAWG
Usage
vis_pcawg_dist(
Gene = "TP53",
Mode = c("Boxplot", "Violinplot"),
data_type = "mRNA",
Show.P.value = TRUE,
Show.P.label = TRUE,
Method = c("wilcox.test", "t.test"),
values = c("#DF2020", "#DDDF21"),
draw_quantiles = c(0.25, 0.5, 0.75),
trim = TRUE,
opt_pancan = .opt_pancan
)
Arguments
Gene |
a molecular identifier (e.g., "TP53") or a formula specifying
genomic signature ( |
Mode |
"Boxplot" or "Violinplot" to represent data |
data_type |
choose gene profile type, including "mRNA", "transcript", "protein", "mutation", "cnv", "methylation", "miRNA". |
Show.P.value |
|
Show.P.label |
|
Method |
default method is wilcox.test |
values |
the color to fill tumor or normal |
draw_quantiles |
draw quantiles for violinplot |
trim |
whether trim the violin |
opt_pancan |
specify one dataset for some molercular profiles |
Value
a ggplot
object
Examples
## Not run:
p <- vis_pcawg_dist(Gene = "TP53")
## End(Not run)
[Package UCSCXenaShiny version 2.1.0 Index]