vis_pancan_anatomy {UCSCXenaShiny}

Visualize Single Gene Expression in Anatomy Location

Description

Visualize Single Gene Expression in Anatomy Location

Usage

vis_pancan_anatomy(
  Gene = "TP53",
  Gender = c("Female", "Male"),
  data_type = "mRNA",
  option = "D",
  opt_pancan = .opt_pancan
)

Arguments

Gene

a molecular identifier (e.g., "TP53") or a formula specifying genomic signature ("TP53 + 2 * KRAS - 1.3 * PTEN").

Gender

a string, "Female" (default) or "Male".

data_type

choose gene profile type, including "mRNA","transcript","methylation","miRNA","protein","cnv"

option

A character string indicating the color map option to use. Eight options are available:

• "magma" (or "A")

• "inferno" (or "B")

• "plasma" (or "C")

• "viridis" (or "D")

• "cividis" (or "E")

• "rocket" (or "F")

• "mako" (or "G")

• "turbo" (or "H")

opt_pancan

specify one dataset for some molercular profiles

Value

a ggplot object