vis_gene_immune_cor {UCSCXenaShiny} | R Documentation |
Heatmap for Correlation between Gene and Immune Signatures
Description
Heatmap for Correlation between Gene and Immune Signatures
Usage
vis_gene_immune_cor(
Gene = "TP53",
cor_method = "spearman",
data_type = "mRNA",
Immune_sig_type = "Cibersort",
Plot = "TRUE",
opt_pancan = .opt_pancan
)
Arguments
Gene |
a molecular identifier (e.g., "TP53") or a formula specifying
genomic signature ( |
cor_method |
correlation method |
data_type |
choose gene profile type, including "mRNA", "transcript", "protein", "mutation", "cnv", "methylation", "miRNA". |
Immune_sig_type |
quantification method, default is "Cibersort" |
Plot |
output the plot directly, default 'TRUE' |
opt_pancan |
specify one dataset for some molercular profiles |
Examples
## Not run:
p <- vis_gene_immune_cor(Gene = "TP53")
## End(Not run)
[Package UCSCXenaShiny version 2.1.0 Index]