vis_gene_cor {UCSCXenaShiny} | R Documentation |
Visualize Gene-Gene Correlation in TCGA
Description
Visualize Gene-Gene Correlation in TCGA
Usage
vis_gene_cor(
Gene1 = "CSF1R",
Gene2 = "JAK3",
data_type1 = "mRNA",
data_type2 = "mRNA",
use_regline = TRUE,
purity_adj = TRUE,
alpha = 0.5,
color = "#000000",
filter_tumor = TRUE,
opt_pancan = .opt_pancan
)
Arguments
Gene1 |
a molecular identifier (e.g., "TP53") or a formula specifying
genomic signature ( |
Gene2 |
a molecular identifier (e.g., "TP53") or a formula specifying
genomic signature ( |
data_type1 |
choose gene profile type for the first gene, including "mRNA","transcript","methylation","miRNA","protein","cnv_gistic2" |
data_type2 |
choose gene profile type for the second gene, including "mRNA","transcript","methylation","miRNA","protein","cnv_gistic2" |
use_regline |
if |
purity_adj |
whether performing partial correlation adjusted by purity |
alpha |
dot alpha. |
color |
dot color. |
filter_tumor |
whether use tumor sample only, default |
opt_pancan |
specify one dataset for some molercular profiles |
[Package UCSCXenaShiny version 2.1.0 Index]