cSPR {TreeSearch}R Documentation

cSPR() expects a tree rooted on a single tip.

Description

cSPR() expects a tree rooted on a single tip.

Usage

cSPR(tree, whichMove = NULL)

Arguments

tree

A tree of class phylo.

whichMove

Integer specifying which SPR move index to perform.

Author(s)

Martin R. Smith (martin.smith@durham.ac.uk)

Examples

tree <- TreeTools::BalancedTree(8)

# Tree must be rooted on leaf
tree <- TreeTools::RootTree(tree, 1)

# Random rearrangement
cSPR(tree)

# Specific rearrangement
cSPR(tree, 9)
[Package TreeSearch version 1.5.0 Index]