viewpathway {TPEA} | R Documentation |
The visualization of interested pathway based on the genes you input, such as differentially expressed genes.
Description
Input the number of the interested pathway in KEGG Database and genes you interested in, such as differentially expressed genes.
Usage
viewpathway(pathwayID, DEGs)
Arguments
pathwayID |
The number of interested pathway ID in KEGG Database, such as "hsa05210". |
DEGs |
The genes you interested in, such as differentially expressed genes. |
Details
The "DEGs" must be Entrez ID. If not, please translate them into Entrez ID.
Value
The interface link to KEGG Database to visualize the pathway you input.
Author(s)
Wei Jiang
Examples
DEGs<-c(836,842,5594,595);
DEG<-as.data.frame(DEGs);
pathwayID<-"hsa05210";
viewpathway(pathwayID,DEG);
[Package TPEA version 3.1.0 Index]