pca_analysis {TOmicsVis} | R Documentation |
PCA dimensional reduction analysis for RNA-Seq.
Description
PCA dimensional reduction analysis for RNA-Seq.
Usage
pca_analysis(sample_gene, group_sample)
Arguments
sample_gene |
Dataframe: All genes in all samples expression dataframe of RNA-Seq (1st-col: Genes, 2nd-col~: Samples). |
group_sample |
Dataframe: Samples and groups for gene expression (1st-col: Samples, 2nd-col: Groups). |
Value
Table: PCA dimensional reduction analysis for RNA-Seq.
Author(s)
benben-miao
Examples
# 1. Library package TOmicsVis
library(TOmicsVis)
# 2. Load example datasets
data(gene_expression)
head(gene_expression)
data(samples_groups)
head(samples_groups)
# 3. Default parameters
res <- pca_analysis(gene_expression, samples_groups)
head(res)
[Package TOmicsVis version 2.0.0 Index]