TNRS_base {TNRS}

Resolve a small batch of plant taxonomic names

Description

Resolve a small batch of plant taxonomic names

Usage

TNRS_base(
  taxonomic_names,
  sources = c("wcvp", "wfo"),
  classification = "wfo",
  mode = "resolve",
  matches = "best",
  accuracy = NULL,
  skip_internet_check = FALSE,
  ...
)

Arguments

taxonomic_names

Data.frame containing two columns: 1) Row number, 2) Taxonomic names to be resolved (or parsed). Alternatively, a character vector of names can be supplied.

sources

Character. Taxonomic sources to use. Default is c("wcvp", "wfo"). Options include "wfo", and "wcvp".

classification

Character. Family classification to use. Currently options include "wfo" (the default).

mode

Character. Options are "resolve" and "parse". Default option is "resolve"

matches

Character. Should all matches be returned ("all") or only the best match ("best", the default)?

accuracy

numeric. If specified, only matches with a score greater than or equal to the supplied accuracy level will be returned.

skip_internet_check

Should the check for internet connectivity be skipped? Default is FALSE.

...

Additional parameters passed to internal functions

Value

Dataframe containing TNRS results.

Note

This function is primarily used as an internal function of TNRS and can only handle relatively small batches of names.

usda = United States Department of Agriculture, wfo = World Flora Online, wcvp = World Checklist of Vascular Plants.