Ultrametrics.HAR {TML} | R Documentation |
Hit-and-Run Sampler for the space of ultrametrics
Description
This sampler samples a point in the space of ultrametrics where each point represents an equidistant tree on n leaves
Usage
Ultrametrics.HAR(x0, n, I = 1, h = 1)
Arguments
x0 |
an equidistant tree defined as ultrametric |
n |
number of leaves for the equidistant tree |
I |
number of states in the Markov chain |
h |
height of phylogenetic tree |
Value
point in the space of ultrametrics over n leaves
Author(s)
Ruriko Yoshida ryoshida@nps.edu
References
Yoshida, Ruriko, Keiji Miura and David Barnhill (2022). Hit and Run Sampling from Tropically Convex Sets.
Examples
x0 <-Sim_Trees15[1,]
n<-10
Ultrametrics.HAR(x0, n, I = 50, h = 1)
[Package TML version 2.3.0 Index]