| AlyLTR {TE} | R Documentation |
LTR retrotransposons in Arabidopsis lyrata
Description
This data file contains the LTR retrotransposons in Arabidopsis lyrata.
Format
A data frame with 397 rows and 7 columns. Each row corresponds to a unique LTR retrotransposon, and each column corresponds to a feature of the LTR-RT. The columns are:
- SeqID
LTR retrotransposon sequence ID
- UngapedLen
Length of each LTR
- Mismatch
Number of mismatches
- Distance
Divergence, as defined by (# of mismatches) / (LTR length)
- sup
Super family membership
- GroupID
LTR retrotransposon Family ID
- thaID
Family name matched in the LTR-RT families of A. thaliana
References
Lamesch, Philippe, Tanya Z. Berardini, Donghui Li, David Swarbreck, Christopher Wilks, Rajkumar Sasidharan, Robert Muller et al. "The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools." Nucleic acids research 40, no. D1 (2011): D1202-D1210.
Dai, X., Wang, H., Dvorak, J., Bennetzen, J., Mueller, H.-G. (2018+). "Birth and Death of LTR Retrotransposons in Aegilops tauschii"