data-df_alltax_info {TDbook}

Data frame containing hierarchical relationship

Description

This Data frame contains hierarchical relationship to be visualized with another data frame that contains taxa and factor information and pvalue, using ggdiffcalde() of The MicrobiotaProcess package.
It's the analysis result of diff_analysis() using public datasets (Kostic et al. 2012) with The MicrobiotaProcess package.
These data frame are used to demonstrates how to visualize the differential taxonomy tree with The MicrobiotaProcess package.
Chap.11.1

Format

A data frame to store taxonomy information, contains 1351 rows and 7 variables (classification levels).

References

Kostic, Aleksandar D, Dirk Gevers, Chandra Sekhar Pedamallu, Monia Michaud, Fujiko Duke, Ashlee M Earl, Akinyemi I Ojesina, et al. Genomic Analysis Identifies Association of Fusobacterium with Colorectal Carcinoma.” Genome Research, Volume 22, Issue 2, 2012, Pages 292–98. doi:10.1101/gr.126573.111

Examples

data(df_alltax_info)