FOV-class {SeuratObject}

The Field of View Object

Description

A modern container for storing coordinates of spatially-resolved single cells. Capable of storing multiple cell segmentation boundary masks. Supports coordinates for spatially-resolved molecule (FISH) data. Compatible with SpatialImage

Slots

molecules

A named list of Molecules objects defining spatially-resolved molecular coordinates

boundaries

A named list of Segmentation and Centroids objects defining spatially-resolved boundaries

assay

A character naming the associated assay of the spatial coordinates

key

A one-length character vector with the object's key; keys must be one or more alphanumeric characters followed by an underscore “_” (regex pattern “^[a-zA-Z][a-zA-Z0-9]*_$”)

See Also

FOV-methods