ProjectDimReduc {Seurat} | R Documentation |
Project query data to reference dimensional reduction
Description
Project query data to reference dimensional reduction
Usage
ProjectDimReduc(
query,
reference,
mode = c("pcaproject", "lsiproject"),
reference.reduction,
combine = FALSE,
query.assay = NULL,
reference.assay = NULL,
features = NULL,
do.scale = TRUE,
reduction.name = NULL,
reduction.key = NULL,
verbose = TRUE
)
Arguments
query |
Query object |
reference |
Reference object |
mode |
Projection mode name for projection
|
reference.reduction |
Name of dimensional reduction in the reference object |
combine |
Determine if query and reference objects are combined |
query.assay |
Assay used for query object |
reference.assay |
Assay used for reference object |
features |
Features used for projection |
do.scale |
Determine if scale expression matrix in the pcaproject mode |
reduction.name |
dimensional reduction name, reference.reduction is used by default |
reduction.key |
dimensional reduction key, the key in reference.reduction is used by default |
verbose |
Print progress and message |
Value
Returns a query-only or query-reference combined seurat object
[Package Seurat version 5.1.0 Index]