IntegrationData-class {Seurat}

The IntegrationData Class

Description

The IntegrationData object is an intermediate storage container used internally throughout the integration procedure to hold bits of data that are useful downstream.

Slots

neighbors

List of neighborhood information for cells (outputs of RANN::nn2)

weights

Anchor weight matrix

integration.matrix

Integration matrix

anchors

Anchor matrix

offsets

The offsets used to enable cell look up in downstream functions

objects.ncell

Number of cells in each object in the object.list

sample.tree

Sample tree used for ordering multi-dataset integration