IntegrateLayers {Seurat}

Integrate Layers

Description

Integrate Layers

Usage

IntegrateLayers(
  object,
  method,
  orig.reduction = "pca",
  assay = NULL,
  features = NULL,
  layers = NULL,
  scale.layer = "scale.data",
  ...
)

Arguments

object

A Seurat object

method

Integration method function

orig.reduction

Name of dimensional reduction for correction

assay

Name of assay for integration

features

A vector of features to use for integration

layers

Names of normalized layers in assay

scale.layer

Name(s) of scaled layer(s) in assay

...

Arguments passed on to method

Value

object with integration data added to it

Integration Method Functions

The following integration method functions are available:

See Also

Writing integration method functions