get_association_matrix.matrix {SeqNet}

Get association matrix

Description

Get association matrix

Usage

## S3 method for class 'matrix'
get_association_matrix(x, tol = 10^-13, ...)

Arguments

x

Either a 'network', 'network_module', or 'matrix' object.

tol

A small tolerance threshold; any entry that is within tol from zero is set to zero.

...

Additional arguments.

Value

An association matrix with entry ij != 0 if node i and j are connected, and 0 otherwise. The diagonal entries are all zero.

Examples

# Create a random network with 10 nodes and add random edge weights.
nw <- random_network(10)
nw <- gen_partial_correlations(nw)
# Get adjacency matrix for the network or individual modules in the network.
get_association_matrix(nw)
module <- nw$modules[[1]]
get_association_matrix(module)