get.trinucleotide.counts {SeqKat}

Get Trinucleotide Counts

Description

Aggregates the total counts of each possible trinucleotide.

Usage

get.trinucleotide.counts(ref.dir, ref.name, output.dir)

Arguments

ref.dir

Path to a directory containing the reference genome.

ref.name

Name of the reference genome being used (i.e. hg19, GRCh38, etc)

output.dir

Path to a directory where output will be created.

Author(s)

Fan Fan

Fouad Yousif

Examples

## Not run: 
get.trinucleotide.counts(ref.dir, "hg19", tempdir());

## End(Not run)