get.toptn {SeqKat}

Get Top Trinucleotides

Description

Generate a tri-nucleotide summary for each sliding window

Usage

get.toptn(somatic.subset, chr, start.bp, end.bp, ref.dir)

Arguments

somatic.subset

Data frame of somatic variants subset for a specific chromosome

chr

Chromosome

start.bp

Starting position

end.bp

Ending position

ref.dir

Path to a directory containing the reference genome.

Author(s)

Fan Fan

Fouad Yousif

Examples

## Not run: 
get.toptn(somatic.subset, chr, start.bp, end.bp, ref.dir)

## End(Not run)