get.tn {SeqKat}

Get Trinucleotides

Description

Count the frequencies of 32 trinucleotide in a region respectively

Usage

get.tn(chr, start.bp, end.bp, ref.dir)

Arguments

chr

Chromosome

start.bp

Starting position

end.bp

Ending position

ref.dir

Path to a directory containing the reference genome.

Author(s)

Fan Fan

Examples

example.ref.dir <- paste0(
	path.package("SeqKat"),
	"/extdata/test/ref/"
	);
get.tn(chr=4, start.bp=1, end.bp=-1, example.ref.dir)