run_pipeline {ScRNAIMM}

Run the main pipeline for ScRNAIMM

Description

Run the main pipeline for ScRNAIMM

Usage

run_pipeline(ScRNA,label=NULL,k=NULL,cells=TRUE,genes=TRUE,outdir=NULL,dataset=NULL)

Arguments

ScRNA

ScRNA-seq data set generated by prepare_dataset function

label

Prior knowledge about cluster labels if NULL, will use our clustering function

k

Prior knowledge about number of clusters if NULL, will use our clustering function

cells

Boolean whether to do the imputation based on cell clustering or not

genes

Boolean whether to do the imputation based on genes or not

outdir

Path to output directory to write the imputed data

dataset

Name of the data set to be the name of the output directory

Value

a data frame with the imputed values

Author(s)

Mohamed Soudy [e-mail]