cluster_cells {ScRNAIMM}

Perform cell clustering based on scDHA method

Description

Cluster cells based on scDHA methods to get cluster labels

Usage

cluster_cells(ScRNA_filtered, Normalize = TRUE, k=NULL, n=5000)

Arguments

ScRNA_filtered

ScRNA-seq data set generated by filter_ScRNA function

Normalize

Boolean parameter whether to apply log10 normalization for the data or not

k

Number of clusters if there is a prior knowledge about that

n

Number of genes to keep after feature selection step

Value

a vector that contains the cell labels

Author(s)

Mohamed Soudy [e-mail]