Hadza {SQMtools}

Hadza hunter-gatherer gut metagenomes

Description

Subset of two bins (and the associated contigs and genes) generated by running SqueezeMeta on two gut metagenomic samples obtained from two hunter-gatherers of the Hadza ethnic group.

Usage

data(Hadza)

Format

A SQM object; see loadSQM.

Source

SRR1927149, SRR1929485.

References

Rampelli et al., 2015. Metagenome Sequencing of the Hadza Hunter-Gatherer Gut Microbiota. Curr. biol. 25:1682-93 (PubMed).

Examples

data(Hadza)
plotTaxonomy(Hadza, "genus", rescale=TRUE)
plotFunctions(Hadza, "COG")