SKAT.haplotypes {SKAT}

Haplotype dataset for power calculation

Description

Haplotype dataset generated by COSI with mimicking linkage disequilibrium (LD) structure of European ancestry.

Format

This list object contains the following objects:

Haplotype

a numeric matrix of 10,000 haplotypes over 200k BP region. Each row represents a different haplotype, and each column represents a different SNP marker. It is generated by the calibration coalescent model (COSI) with mimicking LD structure of European ancestry.

SNPInfo

a dataframe of SNP information.

References

Schaffner, S.F. and Foo, C. and Gabriel, S. and Reich, D. and Daly, M.J. and Altshuler, D. (2005) Calibrating a coalescent simulation of human genome sequence variation. Genome Research, 15, 1576-1583.