addCastePop {SIMplyBee} | R Documentation |
Add caste individuals to the colony
Description
Level 2 function that adds (raises) the specified number of a specific caste individuals to a Colony or MultiColony object by producing offspring from a mated queen. If there are already some individuals present in the caste, new and present individuals are combined.
Usage
addCastePop(
x,
caste = NULL,
nInd = NULL,
new = FALSE,
exact = FALSE,
year = NULL,
simParamBee = NULL,
...
)
addWorkers(x, nInd = NULL, new = FALSE, exact = FALSE, simParamBee = NULL, ...)
addDrones(x, nInd = NULL, new = FALSE, simParamBee = NULL, ...)
addVirginQueens(
x,
nInd = NULL,
new = FALSE,
year = NULL,
simParamBee = NULL,
...
)
Arguments
x |
|
caste |
character, "workers", "drones", or "virginQueens" |
nInd |
numeric or function, number of workers to be added, but see
|
new |
logical, should the number of individuals be added to the caste population
anew or should we only top-up the existing number of individuals to |
exact |
logical, only relevant when adding workers - if the csd locus is turned
on and exact is |
year |
numeric, only relevant when adding virgin queens - year of birth for virgin queens |
simParamBee |
|
... |
additional arguments passed to |
Details
This function increases queen's nWorkers
and nHomBrood
counters.
Value
Colony-class
or MultiColony-class
with
workers added
Functions
-
addWorkers()
: Add workers to a colony -
addDrones()
: Add drones to a colony -
addVirginQueens()
: Add virgin queens to a colony
Examples
founderGenomes <- quickHaplo(nInd = 5, nChr = 1, segSites = 50)
SP <- SimParamBee$new(founderGenomes)
basePop <- createVirginQueens(founderGenomes)
drones <- createDrones(x = basePop[1], nInd = 100)
droneGroups <- pullDroneGroupsFromDCA(drones, n = 5, nDrones = nFathersPoisson)
# Create and cross Colony and MultiColony class
colony <- createColony(x = basePop[2])
colony <- cross(colony, drones = droneGroups[[1]])
apiary <- createMultiColony(basePop[4:5], n = 2)
apiary <- cross(apiary, drones = droneGroups[3:4])
#Here we show an example for workers, but same holds for drones and virgin queens!
# Add workers
addCastePop(colony, caste = "workers", nInd = 20)
# Or use a alias function
addWorkers(colony, nInd = 20)
# Same aliases exist for drones and virgin queens!
# If nInd is NULL, the functions uses the default in SP$nWorkers
# We can change this default
SP$nWorkers <- 15
nWorkers(addWorkers(colony))
# nVirginQueens/nWorkers/nDrones will NOT vary between function calls when a constant is used
# Specify a function that will give a number
nWorkers(addWorkers(colony, nInd = nWorkersPoisson))
nWorkers(addWorkers(colony, nInd = nWorkersPoisson))
# nVirginQueens/nWorkers/nDrones will vary between function calls when a function is used
# Store a function or a value in the SP object
SP$nWorkers <- nWorkersPoisson
(addWorkers(colony))
# nVirginQueens/nWorkers/nDrones will vary between function calls when a function is used
# Queen's counters
getMisc(getQueen(addWorkers(colony)))
# Add individuals to a MultiColony object
apiary <- addWorkers(apiary)
# Add different number of workers to colonies
nWorkers(addWorkers(apiary, nInd = c(50, 100)))