Similarities_Wrapper {SIGN}

Similarities_Wrapper is wrapper to identify similarities between the expression of genes in target sample and the reference expression matrix

Description

Similarities_Wrapper is wrapper to identify similarities between the expression of genes in target sample and the reference expression matrix

Usage

Similarities_Wrapper(ExpMat_Test, ExpMat_Ref, GeneVec, PathwaySet, RefID,
  TestClassIter, SampleIter)

Arguments

ExpMat_Test

Expression matrix of test samples

ExpMat_Ref

Expression matrix of reference samples

GeneVec

Vector of gene names

PathwaySet

List of pathways containing gene annotations for each pathways

RefID

Class of the reference set

TestClassIter

Class of the test set (if it is the same as reference set, the target test sample will be removed fro the reference set)

SampleIter

Target test sample in ExpMat_Testto be used for comparison with ExpMat_Ref

Value

List of similarities between the target sample and the expression matrix of reference samples