SIGN_Ensemble_SimCal {SIGN}

SIGN_Ensemble_SimCal is a function for Generating list fo similarities based on different pathway quantification methods and similarity measures

Description

SIGN_Ensemble_SimCal is a function for Generating list fo similarities based on different pathway quantification methods and similarity measures

Usage

SIGN_Ensemble_SimCal(ExpList, RefClassID, TestClassID, GeneID, PathwaySets)

Arguments

ExpList

List of expression matrices for different groups of samples used in the centroid classification scheme

RefClassID

Names of the matrices in the ExpList

TestClassID

ID of a matrix in ExpList to be used as test set

GeneID

Parameter to determine if gene annotations are provided as Symbols or EntrezIDs

PathwaySets

List of pathways containing gene annotations for each pathways

Value

List of similarities identified in both gene and pathway level