Genes_SimCal {SIGN}

Genes_SimCal is a function to calculate similarity between a set of samples and 2 reference groups of samples

Description

Genes_SimCal is a function to calculate similarity between a set of samples and 2 reference groups of samples

Usage

Genes_SimCal(ExpMat_Test, ExpMat_Ref1, ExpMat_Ref2, RefIDs, TestClassIter,
  SampleIter)

Arguments

ExpMat_Test

Expression matrix for the test samples for which SIGN will indetify the similarity with the 2 reference sataset

ExpMat_Ref1

Expression matrix for the 1st reference set fo samples

ExpMat_Ref2

Expression matrix for the 2nd reference set fo samples

RefIDs

Annotations corresponding to the 2 expression matrices (1st and 2nd names are associated with the 1st and 2nd expression matrix and )

TestClassIter

Index to be matched with RefIDs for removal of test samples from reference expression matrices

SampleIter

Index of samples in the test expression matrix exist in referencece expression matrix 1 or 2

Value

Vector of similarity between the target samples and the 2 reference sets