GSVA_Calculation {SIGN} | R Documentation |
GSVA_Calculation is a function for Calculating correlation between expression level of pathways between 2 groups using GSVA
Description
GSVA_Calculation is a function for Calculating correlation between expression level of pathways between 2 groups using GSVA
Usage
GSVA_Calculation(ExpMat1, ExpMat2, GeneVec, GeneSets,
Name = "SampleComparison")
Arguments
ExpMat1 |
Expression matrix of genes in the 1st group of sampls |
ExpMat2 |
Expression matrix of genes in the 2nd group of sampls |
GeneVec |
Name of genes in the same order as considered in ExpMat1 and ExpMat2 |
GeneSets |
List of genes within pathways |
Name |
Name used for naming the columns of output matrix of correlation between the 2 groups |
Value
Similarity of the pathway between the two expression matrices based on pearson correlation, bubble sort, and wilcoxon paaired rank test using GSVA enrichment scores of pathways
[Package SIGN version 0.1.0 Index]