select_common_genes {SCOPRO}

select_common_genes

Description

select_common_genes

Usage

select_common_genes(
  SCOPRO_output,
  marker_stages,
  selected_stages,
  name_vivo,
  cluster_vitro,
  name_vitro
)

Arguments

SCOPRO_output

output given by function SCOPRO

marker_stages

Second element of the list given as output by the function select_top_markers

selected_stages

In vivo stages for which the markers where computed with the function select_top_markers

name_vivo

name of the in vivo stage on which SCOPRO is run

cluster_vitro

cluster for in vitro dataset

name_vitro

name of the in vitro stage for which we want to know the conserved markers with the name_vivo stage

Value

Character vector with the names of the conserved markers of name_vivo stage in the name_vitro stage

Author(s)

Gabriele Lubatti [e-mail]