plot.SCGLR {SCGLR} | R Documentation |
SCGLR generic plot
Description
SCGLR generic plot
Usage
## S3 method for class 'SCGLR'
plot(x, ..., style = getOption("plot.SCGLR"),
plane = c(1, 2))
Arguments
x |
an object from SCGLR class. |
... |
optional arguments (see customize). |
style |
named list of values used to customize the plot (see customize) |
plane |
a size-2 vector (or comma separated string) indicating which components are plotted (eg: c(1,2) or "1,2"). |
Value
an object of class ggplot
.
Examples
## Not run:
library(SCGLR)
# load sample data
data(genus)
# get variable names from dataset
n <- names(genus)
ny <- n[grep("^gen",n)] # Y <- names that begins with "gen"
nx <- n[-grep("^gen",n)] # X <- remaining names
# remove "geology" and "surface" from nx
# as surface is offset and we want to use geology as additional covariate
nx <-nx[!nx%in%c("geology","surface")]
# build multivariate formula
# we also add "lat*lon" as computed covariate
form <- multivariateFormula(ny,c(nx,"I(lat*lon)"),c("geology"))
# define family
fam <- rep("poisson",length(ny))
genus.scglr <- scglr(formula=form,data = genus,family=fam, K=4,
offset=genus$surface)
summary(genus.scglr)
barplot(genus.scglr)
plot(genus.scglr)
plot(genus.scglr, predictors=TRUE, factor=TRUE)
pairs(genus.scglr)
## End(Not run)
[Package SCGLR version 3.0 Index]