plot_crosscorr {SAMtool}

Produce a cross-correlation plot of the derived data arising from getinds(MSE_object)

Description

Produce a cross-correlation plot of the derived data arising from getinds(MSE_object)

Usage

plot_crosscorr(
  indPPD,
  indData,
  pp = 1,
  dnam = c("CS", "CV", "CM", "IS", "MLS"),
  res = 1
)

Arguments

indPPD

A 3D array of results arising from running getind on an MSE of the Null operating model (type of data/stat (e.g. mean catches),time period (chunk), simulation)

indData

A 3D array of results arising from running getind on an MSE of the Alternative operating model (type of data/stat (e.g. mean catches),time period (chunk), simulation)

pp

Positive integer, the number of time chunks (blocks of years normally, second dimension of indPPD and indData) to produce the plot for.

dnam

A character vector of names of the data for plotting purposes (as long as dimension 1 of indPPD and indData).

res

The size of the temporal blocking that created indPPD and indData - this is just used for labelling purposes

Value

A cross-correlation plot (ndata-1) x (ndata-1)

Author(s)

T. Carruthers

References

Carruthers and Hordyk 2018