plot.Assessment {SAMtool}

Plot Assessment object

Description

Produces HTML file (via markdown) figures of parameter estimates and output from an Assessment object.

Usage

## S4 method for signature 'Assessment,missing'
plot(
  x,
  filename = paste0("report_", x@Model),
  dir = tempdir(),
  ret_yr = 0L,
  open_file = TRUE,
  quiet = TRUE,
  render_args = list(),
  ...
)

## S4 method for signature 'Assessment,retro'
plot(
  x,
  y,
  filename = paste0("report_", x@Model),
  dir = tempdir(),
  open_file = TRUE,
  quiet = TRUE,
  render_args = list(),
  ...
)

Arguments

x

An object of class Assessment.

filename

Character string for the name of the markdown and HTML files.

dir

The directory in which the markdown and HTML files will be saved.

ret_yr

If greater than zero, then a retrospective analysis will be performed and results will be reported. The integer here corresponds to the number of peels (the maximum number of terminal years for which the data are removed).

open_file

Logical, whether the HTML document is opened after it is rendered.

quiet

Logical, whether to silence the markdown rendering function.

render_args

Arguments to pass to render.

...

Other arguments.

y

An object of class retro.

Value

Returns invisibly the output from render.

See Also

retrospective

Examples

output <- DD_TMB(Data = Simulation_1)


plot(output)