plotMuSSE {RevGadgets} | R Documentation |
plotMuSSE
Description
plotMuSSE
Usage
plotMuSSE(rates)
Arguments
rates |
(data.frame; no default) a data frame containing columns "value", "rate", "hidden_state", "observed_state" (such as the output of processSSE()) |
Value
a ggplot object
Examples
# download the example dataset to working directory
url <-
"https://revbayes.github.io/tutorials/intro/data/primates_BiSSE_activity_period.log"
dest_path <- "primates_BiSSE_activity_period.log"
download.file(url, dest_path)
# to run on your own data, change this to the path to your data file
bisse_file <- dest_path
pdata <- processSSE(bisse_file)
p <- plotMuSSE(pdata);p
# change colors:
p + ggplot2::scale_fill_manual(values = c("red","green"))
# change x-axis label
p + ggplot2::xlab("Rate (events/Ma)")
# remove file
# WARNING: only run for example dataset!
# otherwise you might delete your data!
file.remove(dest_path)
[Package RevGadgets version 1.2.1 Index]