plot_enrich_res {ReporterScore} | R Documentation |
Plot enrich_res
Description
Plot enrich_res
Plot enrich_res
Usage
plot_enrich_res(
enrich_res,
mode = 1,
padj_threshold = 0.05,
show_ID = FALSE,
Pathway_description = TRUE,
facet_level = FALSE,
facet_anno = NULL,
str_width = 50,
facet_str_width = 15,
...
)
## S3 method for class 'enrich_res'
plot(
x,
mode = 1,
padj_threshold = 0.05,
show_ID = FALSE,
Pathway_description = TRUE,
facet_level = FALSE,
facet_anno = NULL,
str_width = 50,
facet_str_width = 15,
...
)
Arguments
enrich_res |
enrich_res object |
mode |
plot style: 1~2 |
padj_threshold |
p.adjust threshold |
show_ID |
show pathway id |
Pathway_description |
show KO description rather than KO id. |
facet_level |
facet plot if the type is "pathway" or "module" |
facet_anno |
annotation table for facet, two columns, first is level summary, second is pathway id. |
str_width |
default: 50 |
facet_str_width |
str width for facet label |
... |
add |
x |
enrich_res object |
Value
ggplot
ggplot
See Also
Other common_enrich:
KO_enrich()
,
KO_fisher()
,
KO_gsa()
,
KO_gsea()
,
KO_gsva()
,
KO_padog()
,
KO_safe()
,
KO_sea()
[Package ReporterScore version 0.1.6 Index]