load_htable {ReporterScore} | R Documentation |
Load the specific table (from 'KEGG')
Description
Load the specific table (from 'KEGG')
Load the KOlist (from 'KEGG')
Load the CPDlist (from 'KEGG')
Load the KO description (from 'KEGG')
Load the KO_htable (from 'KEGG')
Load the Pathway_htable (from 'KEGG')
Load the Module_htable (from 'KEGG')
Load the Compound_htable (from 'KEGG')
Load the pathway information for an organism (from 'KEGG')
Usage
load_htable(type, verbose = TRUE)
load_KOlist(verbose = TRUE)
load_CPDlist(verbose = TRUE)
load_KO_desc(verbose = TRUE)
load_KO_htable(verbose = TRUE)
load_Pathway_htable(verbose = TRUE)
load_Module_htable(verbose = TRUE)
load_Compound_htable(verbose = TRUE)
load_org_pathway(org = "hsa", verbose = TRUE)
Arguments
type |
"ko", "module", "pathway", "compound" ... |
verbose |
logical |
org |
kegg organism, listed in https://www.genome.jp/kegg/catalog/org_list.html, default, "hsa" |
Value
KO_htable
KOlist
CPDlist
KO description
KO_htable
Pathway_htable
Module_htable
Compound_htable
KOlist
Examples
Pathway_htable <- load_htable("pathway")
head(Pathway_htable)
[Package ReporterScore version 0.1.6 Index]