| W303 {Repliscope} | R Documentation |
Sequence read coverage ratios for wild type S.cerevisiae W303
Description
Sequence read coverage ratios for wild type sample (T7107 strain). The cells were stained with DNA dye and sorted based on DNA content into S or G2/M phase fractions. Extracted DNA was sequenced and mapped to sacCer3 genome. Unique reads for replicating (S) and non-replicating (G2/M) samples were calculated in 1 kb genomic bins. The ratio was created by dividing 'score' values from replicating sample by non- replicating sample 'score' values, adjusted by total number of reads.
Usage
data(W303)
Format
data frame with 11350 rows and 7 variables:
- chrom
short chromosome name
- chromStart
left chromosome coordinate
- chromEnd
right chromosome coordinate
- name.rep
replicating sample name
- name.nonRep
non-replicating sample name
- ratio
ratio value in the current bin
- ratioFactor
adjustment factor used for the current ratio
Source
S phase sample: SRA; G2 sample: SRA
References
Natsume et al. (2013) Mol Cell 50(5):661-74 (PubMed)
Examples
data(W303)