TrepDF {Repliscope} | R Documentation |
Trep data calculated from syncSeq[["data"]]
Description
Trep is median replication time, expressed in minutes after release G1 arrest. It is calculated from multiple relative copy number datapoints across timeseries of a cell cycle experiment. For every genomic bin, a sigmoid function is fitted and its midpoint is reported.
Usage
data(TrepDF)
Format
data frame with 11341 rows and 5 variables:
- chrom
short chromosome name
- chromStart
left chromosome coordinate
- chromEnd
right chromosome coordinate
- Trep
calculated Trep value
- TrepErr
error from sigmoid function fitting
References
Müller et al. (2014) NAR 42(1):e3 (PubMed)
Examples
data(TrepDF)
[Package Repliscope version 1.1.1 Index]