| cdb_mean_matF {Rcompadre} | R Documentation |
Calculate a population-specific mean fecundity matrix for each set of matrices in a COM(P)ADRE database
Description
Takes a CompadreDB object and calculates a grand mean fecundity matrix for
each unique population (a mean of all population-specific fecundity matrices,
including fecundity matrices for which MatrixComposite == 'Mean').
Populations are defined based on unique combinations of the columns 'SpeciesAuthor', 'MatrixPopulation', and 'MatrixDimension', (or optionally, a different set of columns supplied by the user).
The main purpose of this function is to identify stage classes that are potentially reproductive (i.e. the absence of fecundity in a given stage class and year does not necessarily indicate that the stage in question is non-reproductive).
Usage
cdb_mean_matF(
cdb,
columns = c("SpeciesAuthor", "MatrixPopulation", "MatrixDimension")
)
Arguments
cdb |
A CompadreDB object |
columns |
Vector of column names from which unique populations should be
identified. Defaults to |
Value
Returns a list of matrices, representing the mean fecundity matrix associated with each row of the database.
Author(s)
Owen R. Jones <jones@biology.sdu.dk>
Danny Buss <dlb50@cam.ac.uk>
Julia Jones <juliajones@biology.sdu.dk>
Iain Stott <stott@biology.sdu.dk>
Patrick Barks <patrick.barks@gmail.com>
See Also
Other data management:
cdb_flatten(),
cdb_id_stages(),
cdb_id_studies(),
cdb_id(),
cdb_rbind(),
cdb_unflatten(),
cdb_unnest(),
mpm_mean(),
mpm_median(),
mpm_sd(),
string_representation
Examples
# print matF associated with row 16 of database
Compadre$mat[[16]]
# create list of meanMatFs
meanF <- cdb_mean_matF(Compadre)
# print meanMatF associated with row 16 of database
meanF[[16]]