Window Functions {RcmdrPlugin.BiclustGUI}

Window Functions

Description

List of window functions, responsible for creating all the dialogs.

Usage

bicare_WINDOW()
bicarebiclust_WINDOW(methodname)
bcdiag_WINDOW(methodname)
bcdiagwrite_WINDOW(methodname,fabia.thresZ,fabia.thresL)
biclustbimax_WIN()
biclustCC_WIN()
biclustextraplots_WINDOW(methodname)
biclustplaid_WIN()
biclustquest_WIN()
biclustspectral_WIN()
biclustXMotif_WIN()
clearresults_WINDOW()
exportFURBY_WINDOW()
exportTXT_WINDOW()
extractbicluster_WINDOW()
fabiabiclust_WINDOW(methodname,thresZ,thresL)
fabialaplace_WIN()
fabiapostprojection_WIN()
fabiasparsenessprojection_WIN()
fabiaSPARSE_WIN()
findbiclusters_WINDOW()
iBBiG_WIN()
image_WINDOW()
isadefault_WIN()
isaextraplots_WINDOW(methodname)
jaccard_WINDOW()
plotgridpref_WINDOW()
rqubic_WINDOW()
saveload_WINDOW()
s4vd_WIN()
search_WINDOW()
ssvd_WIN()
superbiclust_WINDOW(methodname,methodseed,methodsave)
MaxBC_WINDOW()
bibit_WIN()
bibit3_WIN()
bibitworkflow_WIN(methodname)
heatmapJI_WINDOW()

Arguments

methodname

These windows are called from a specific biclustering method window. The argument is a string containing the name of the method it is called from.

methodseed

Logical Value of methodseed option for the method chosen in methodname. Superbiclust window needs this information to generate the window correctly (e.g. the repeat analysis box)

methodsave

Logical Value of methodsave option for the method chosen in methodname. Superbiclust window needs this information to apply the repeat analysis correctly

thresZ

Fabia bicluster samples threshold

thresL

Fabia bicluster loadings threshold

fabia.thresZ

See thresZ

fabia.thresL

See thresL

Details

All these window functions for all the biclustering dialogs were created using the template scripts (newmethod_script.R & newtool_script.R). A detailed description with an example on how to use these scripts and how to create the dialogs, can be found in the appendix (Guideline to New Implementations).

Please note that these template scripts are also located in the doc subdirectory of the package.

Author(s)

Ewoud De Troyer [e-mail]