| tableColbases {Racmacs} | R Documentation |
Calculate column bases for a titer table
Description
For more information on column bases, what they mean and how they are
calculated see vignette("intro-to-antigenic-cartography")
Usage
tableColbases(
titer_table,
minimum_column_basis = "none",
fixed_column_bases = rep(NA, ncol(titer_table)),
ag_reactivity_adjustments = rep(0, nrow(titer_table))
)
Arguments
titer_table |
The titer table |
minimum_column_basis |
The minimum column basis to assume |
fixed_column_bases |
Fixed column bases to apply |
ag_reactivity_adjustments |
Reactivity adjustments to apply on a per-antigen basis |
Value
Returns a numeric vector of the log-converted column bases for the table
See Also
Other map diagnostic functions:
agCohesion(),
bootstrapBlobs(),
bootstrapMap(),
checkHemisphering(),
dimensionTestMap(),
logtiterTable(),
map-table-distances,
mapBootstrapCoords,
mapDistances(),
mapRelaxed(),
mapResiduals(),
pointStress,
ptBootstrapBlob,
ptBootstrapCoords(),
ptLeverage,
ptTriangulationBlob,
recalculateStress(),
stressTable(),
tableDistances(),
triangulationBlobs(),
unstableMaps
Other functions relating to map stress calculation:
logtiterTable(),
mapDistances(),
mapResiduals(),
pointStress,
recalculateStress(),
stressTable(),
tableDistances()