relaxMapOneStep {Racmacs}

Relax a map one step in the optimiser

Description

Relax a map one step in the optimiser

Usage

relaxMapOneStep(
  map,
  optimization_number = 1,
  fixed_antigens = FALSE,
  fixed_sera = FALSE,
  options = list()
)

Arguments

map

The acmap data object

optimization_number

The map optimization number

fixed_antigens

Antigens to set fixed positions for when relaxing

fixed_sera

Sera to set fixed positions for when relaxing

options

List of named optimizer options, see RacOptimizer.options()

Value

Returns an updated map object

See Also

Other map optimization functions: RacOptimizer.options(), make.acmap(), moveTrappedPoints(), optimizeMap(), randomizeCoords(), relaxMap()